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Covipyte™ & Covidyte™ Peptide Substrate Series Developed For The Fight Against COVID-19

 

 

The inhibition of viral proteases necessary for proteolytic processing of polyproteins has been a successful strategy in the treatment of human immunodeficiency virus (HIV) and hepatitis C respectively, proving the potential of protease inhibitors for the treatment of viral infections. Similarly, the main protease of SARS-CoV-2 is thought to be essential for viral replication and, therefore, is regarded as promising target for antiviral therapy of Covid-19.

 

There is an extremely urgent need for the development of specific antiviral therapeutics and vaccines against SARS-CoV-2. The coronavirus main protease, which plays a pivotal role in viral gene expression and replication through the proteolytic processing of replicase polyproteins, is an attractive target for anti-CoV drug design.

 

Multiple peptide substrates have been developed for monitoring the intensity of coronavirus proteases via FRET.

 

The Covidyte™ ED450, Covidyte™ EN450, Covidyte™ TF670, and Covidyte™ IF670 peptide substrates provide strong, extended fluorescent signal for searching inhibitors of coronavirus proteases with high sensitivity.

 

The papain-like proteases (PLpro) of coronaviruses carry out proteolytic maturation of non-structural proteins that play a role in replication of the virus and performs deubiquitination of host cell factors to scuttle antiviral responses. The newly-developed Covipyte™ EN450 is a peptide substrate containing the 9 amino acid sequence (RELNGGAPI) that can be cleaved by coronavirus PLpro, used for screening and studying the kinetics of PLpro inhibitors.

 

Additionally, Z-KAGG-AMC, Z-LRGG-AMC, and Z-KKAG-AMC are cleaved by papain-like proteases to give the highly fluorescent AMC product, to measure protease activity, and might be used for screening and studying kinetics of PLpro inhibitors.

 

 

Substrates Available

 

 

Covipyte™ EN450

Peptide substrate containing a 9 amino acid sequence (RELNGGAPI) that can be cleaved by coronavirus PLpro

 

The dark-FRET peptide contains Edans (donor) and Dabcyl (quencher) on the N-and C-terminals respectively where the fluorescence of Edans is effectively quenched by Dabcyl when the peptide is intact. 

Z-KAGG-AMC

Protease substrate that is cleaved by papain-like proteases to give the highly fluorescent AMC product.

 

The fluorescence intensity of released AMC is proportional to the protease activity.

 

 

 

Z-KKAG-AMC

Protease substrate that is cleaved by papain-like proteases to give the highly fluorescent AMC product.

 

The fluorescence intensity of released AMC is proportional to the protease activity.

Z-LRGG-AMC

Protease substrate that is cleaved by papain-like proteases to give the highly fluorescent AMC product.

 

The fluorescence intensity of released AMC is proportional to the protease activity.

 

 

Covidyte™ IF670

Peptide substrate containing a 14 amino acid sequence that can be cleaved by coronavirus proteases

 

The dark-FRET peptide contains Tide Quencher™ 5 (TQ5) as a quencher and iFluor™ 670 as a fluorescent donor on the N-and C-terminals respectively

 

When the peptide is hydrolyzed by coronavirus proteases, the iFluor™ 670 fragment generates significantly enhanced fluorescence since its fluorescence is no longer quenched by TQ5

Covidyte™ TF670

Peptide substrate containing a 14 amino acid sequence that can be cleaved by coronavirus proteases

 

The dark-FRET peptide contains Tide Quencher™ 5 (TQ5) as a quencher and Tide Fluor™ 5 (TF5) as a fluorescent donor on the N-and C-terminals respectively

 

When the peptide is hydrolyzed by coronavirus proteases, the TF5 fragment generates significantly enhanced fluorescence since its fluorescence is no longer quenched by TQ5

 

 

Covidyte™ ED450

Peptide substrate containing an 11 amino acid sequence that can be cleaved by coronavirus proteases

Covidyte™ EN450

Peptide substrate containing a 14 amino acid sequence that can be cleaved by coronavirus proteases

 

 

More Information

 

Custom Synthesis

Custom Services are available for the development of specific substrates, particles, assays, and conjugations. Please inquire for details on how we can assist in synthesizing the missing part of your new protocol.

 

·    Label + antibody

·    Label + peptide

·    Peptide synthesis

·    Label + different functional group

 

 

FRET Donor/Acceptor Dyes

In addition to Tide Fluor™ and Tide Quencher™ FRET pairs, we offer various combinations of classic donor and acceptor dyes. Develop FRET peptides for measuring enzyme activity, receptor-ligand interactions, colocalization studies and much more.

 

·    Matrix Metalloproteinases (MMPs)

 

Resources and Tools

AAT Bioquest offers many resources and online tools for research, including:

 

·    Peptide and Protein Molecular Weight Calculator

·    P?rotein Concentration Calculator

·    Application Notes publicly available for in-depth implementation

 



 

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